[Date Prev][Date Next][Thread Prev][Thread Next][Date Index][Thread Index]
NMRView issues with saving RNA assignments in STAR file
Since I recently joined the list, I don't know if this has been
addressed prior, so I'll get it out in the open. The background
specifics: I'm using NMRViewJ 6.6.2 with Java version 5. I recently
began to assign sugar proton resonances for an RNA that I'm working
with. I entered all of the shifts that I had into the atom
assignment table and saved everything in a STAR file. When I tried
to read the STAR file in NMRViewJ, I got an error. It turns out that
the apostrophe (prime) that is used to denote the sugar atoms is also
used for commenting out stuff in the STAR file. Therefore, when
NMRViewJ was attempting to read the STAR file, it was disregarding
the chemical shifts and constraints that appeared on the line of text
after the apostrophe (prime). I changed all of the apostrophes to a
lower case s in my STAR file as well as all of the nucleotide reslib
files, and it seems to work just fine.
John Means
Ohio University