NMRViewJ 7.0.14 is now available

[Bruce Johnson <nmrview@xxxxxxx>]

Lots of changes as listed below.  Given the number of changes I may  
well have introduced some bugs (though it doesn't look like it), so  
feedback is appreciated.  I haven't had a chance to run through tests  
on all platforms, but I know there are people anxious for some of the  
fixes so here it is.  I'll be doing more testing this week.

Next up, latest incarnation of documentation, and HCCH assignment  
tools (some stuff is in this version but it's not really ready).



Fix XOR color so crosshair cursor colors are correct on non-white  
background.

Fix slices for 3rd and 4th dimensions, 4th dim slice wasn't working  
at all, and both
   were not being drawn across full spectrum width.

Fixed writing vectors into matrices that caused intensities of data  
points to be scaled down every time a matrix
   was rephased or baseline corrected.

nv_peak analysis, and nv_dataset analyze now return coordinates (in  
ppm) of max value in region.

Delete List (in Peak Navigator Edit Menu) now works, also changed   
nv_peak delete so it deletes a
    list if given listname, deletes a peak if given peak specifier.

Fixed sorting in peak and atom tables so that sorting of real numbers  
works properly.

Changed "nv_win ppm"  so that setting ppm range doesn't cause  
automatic repaint of spectrum.

Added three button mouse mode.
     Left button controls crosshair 1, middle button controls  
crosshair 2, Right button menu (as before)
     Can switch between modes from Spectrum popup menu, and set mode  
in Preferences.

Add preferences dialog entries for CrossHair Colors and Axes colors

Fixed "Crosshair Position Font" preference so it actually effects the  
font used in the crosshair position display.

Added Nv_PeakPickFromPeaks proc  to generate a new peak list starting  
picking from existing list positions.


Added Graph Tab in Spectrum Attributes for setting fonts, colors  
(except actual spectra), borders
    Includes pictorial selector of spectrum chart color schemes

Added Spectrum Menu Option to "Delete Selected Peaks"

Fixed "Delete" key binding in spectra so after active peak is deleted  
the window is redrawn (so peak disappears)

Fixed Z2(A) plane slider in the "blue box" display (didn't work at  
all before)

Fixed slice code so that "Restore Edges" sets slice positions back to  
the center of spectrum.

Cleaned up Vector display window and  eliminated unused or  
experimental GUI elements.

Rewrite ipap.tcl to have a built-in table to display analysis results.

Put catch in start.tcl to catch errors in loading .nvjrc file

Add Nv_PeakRegister command to automatically line up peak lists.

Many changes to RunAbout
  Change so there is no dependency on "peak list pairs"
      You used to have to explicitly enter pairs like hncoca and hnca
  Change Parameters Tab to have defined set of peak lists
  Add View Tab where displayed rows and "N Wings" are set
  Many new procs to support HCCH experiments (still experimental)
  Thaw fragments button allows un-assigning fragments
  Add listbox to show scores of fragments
  Neighbor button now steps through multiple neighbor clusters  
(within tolerances)
  Fixed various problems in saving results to STAR3 file
  Fix problem in merging resonances (should keep resonance with  
label/atom).
  Change score min used in testing match to sequence so it is more  
accepting of deviations.
  Simplify pruneRedundant and fix it to get more situations correctly
  Add button for TrimAllWeak
  Changed cluster linking display to be more informative of cluster  
matches (RAV)

Changes in the Swank toolkit:
   Fixed bug in canvas (background color wasn't working)
   Fixed bug in radiobuttons (weren't in selected state when creating).