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Re: NMRView NOE analysis

To: Andrew Severin <severin@xxxxxxxxxxx>
Subject: Re: NMRView NOE analysis
From: "Mueller, Geoffrey (NIH/NIEHS)" <mueller3@xxxxxxxxxxxxx>
Date: Tue, 10 Apr 2007 10:37:16 -0400
Cc: NMR <nmrview@xxxxxxxxxxxxxxxxxxxxx>
In-reply-to: <544b4b9a0704061038u52ac031o53e50f29187bcfa2@xxxxxxxxxxxxxx>
Thread-index: Acd7fbwV+shQPudwEdu2hwAUUQ0daA==
Thread-topic: NMRView NOE analysis
User-agent: Microsoft-Entourage/11.3.3.061214

Title: Re: NMRView NOE analysis

Andrew,

The edit->identify dialogue will work.

In the peakinspector->edit->reference you need to specify the pattern and idtolerances.

For example for the 15N noesy these are likely to be for you:

i.hn j.h* i.n

And for the tolerances something like

0.03 0.05 0.3

Each time you scroll to a peak the identify dialogue ( peakinspector->edit->identify) wil calculate possibilities.

Geoff

--
Geoffrey A. Mueller, Ph.D.
Staff Scientist, NIEHS

On 4/6/07 1:38 PM, "Andrew Severin" <severin@xxxxxxxxxxx> wrote:

I have 3D NOESY and TOCSY datasets from 15N labeled protein. I am struggling to find resources or references that describe how to link/cluster the spin system peak boxes and automatically find and assign potential NOEs. Most of the documentation appears to be for Carbon labeled protein. Can Runabout be used to analyze 15N only data? The movie I downloaded on runabout appears to be missing a sound file. Where can I download this file? I found the peakinspector->edit->identify dialogue but do not have enough information to utilize it.

Any information would be greatly appreciated.

Andrew Severin
Graduate student Biophysics
Iowa State University

References:
- NMRView NOE analysis
  - From: Andrew Severin

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